发表的主要论文主要有：
（1） Wu Daiyong, Ye Yuantu, Xiao Peizhen, Ren Shengjie, Shi Ye, Zhang Baotong, Cai Chunfang. Comparative study on the effects of high dietary levels of pectin and soybean oil on liver health and bile acid homeostasis in grass carp (Ctenopharyngodon idellus). Aquaculture Reports, 2024, 39, 102532.
（2） Yao Shibin; Li Wenjian; Cai Chunfang; Wang Chengrui; Kang Jia; Hu Honglin; Wu Ping; Cao Xiamin; Ye Yuantu; Comparative study on the effects of four plant protein sources on the liver and intestinal health of Largemouth bass, Micropterus salmoides, Aquaculture Nutrition, 2024, article 6337005. DOI: 10.1155/2024/6337005.
（3） Qianqian Wang, Chunfang Cai, Junbiao Zhang, Dianzhang Shui, Guangtong Cui, Zhi Wang, Shengjie Ren, Ping Wu, Yuantu Ye. Gene cloning, expression pattern, and response to dietary total lipids and phospholipids of hormone-sensitive lipase (HSL) in the Oriental river prawn Macrobrachium nipponense De Haan, 1849 (Decapoda: Caridea: Palaemonidae). Journal of Crustacean Biology, 2023, 43, 1–12.
（4） Ge Yiyang; Yao Shibin; Shi Ye; Cai Chunfang; Wang Chengrui; Wu Ping; Cao Xiamin; Ye Yuantu. Effects of Low or High Dosages of Dietary Sodium Butyrate on the Growth and Health of the Liver and Intestine of Largemouth Bass, Micropterus salmoides[J]. Aquaculture Nutrition, 2022, 2022: 1-9.
（5） Yao Shibin; Ren Shengjie; Cai Chunfang; Cao Xiamin; Shi Ye; Wu Ping; Ye Yuantu Glycocholic acid supplementation improved growth performance and alleviated tissue damage in the liver and intestine in Pelteobagrus fulvidraco fed a high-pectin diet[J]. Fish Physiol Biochem, 2022. https://doi.org/10.1007/s10695-022-01148-3
（6） Cao Xiamin; Ren Shengjie; Cai Chunfang; Ni Qin; Li Xinyue; Meng Yunhe; Meng Zijing; Shi Ye; Chen Huangen; Jiang Rong; Wu Ping; Ye Yuantu; Dietary pectin caused great changes in bile acid profiles of Pelteobagrus fulvidraco, Fish Physiology and Biochemstry. https://doi.org/10.1007/s10695-021-01028-2
（7） Ni Qin; Cai Chunfang; Ren Shengjie; Zhang Junbiao; Zhao Yijun; Wei Xinyi; Ge Yiyang; Wang Chengrui; Li Wenjian; Wu Ping; Ye Yuantu; Cao Xiamin; Pectin and soybean meal induce stronger inflammatory responses and dysregulation of bile acid (BA) homeostasis than cellulose and cottonseed meal, respectively, in largemouth bass (Micropterus salmoides), which might be attributed to their BA binding capacity, Aquaculture Research, 2021, https://doi.org/10.1111/are.15140
（8） Cai Chunfang; Ren Shengjie; Cui Guangtong; Ni Qin; Li Xinyue; Meng Yunhe; Meng Zijing; Zhang Junbiao; Su Xiong; Chen Huangen; Jiang Rong; Lu Jianqiao; Ye Yuantu; Cao Xiamin; Short-term stress due to dietary pectin induces cholestasis, and chronic stress induces hepatic steatosis and fibrosis in yellow catfish, Pelteobagrus fulvidraco, Aquaculture, 2020, 516: 734607.
（9） Ren Shengjie; Cai Chunfang; Cui Guangtong; Ni Qin; Jiang Rong; Su Xiong; Wang Qianqian; Chen Wen; Zhang Junbiao; Wu Ping; Lu Jianqiao; Ye Yuantu; High dosages of pectin and cellulose cause different degrees of damage to the livers and intestines of Pelteobagrus fulvidraco, Aquaculture, 2020, 514: 734445.
（10） Chunfang Cai, Jie He, Wen Chen, Junbiao Zhang, Qianqian Wang, Xuehong Song, Yuantu Ye, Yongling Wang, Ping Wu, Xiamin Cao. Biological manipulation of eutrophication in West Yangchen Lake. Aquaculture and Fisheries, 2019, 4(5): 190-197.
（11） Ren Shengjie; Zhu Jianming; CaiChunfang; Wang Zhi; Wu Ping; Wang Yongling; Cao Xiamin; Ye Yuantu; Pectin plays a role in restricting the utilization of rapeseed meal by Chinese mitten crab, Eriocheir sinensis, Aquaculture Research, 2019，50: 611-620.
（12） Shengjie Ren; Jianming Zhu; Chunfang Cai*; Zhi Wang; Wen Chen; Qianqian Wang; Guangtong Cui; Qin Ni; Junbiao Zhang; Ping Wu; Yuantu Ye; Effects of xylan and cottonseed meal on growth performance, digestion, intestinal morphology, and the expression of two peritrophin genes of Chinese mitten crab, Eriocheir sinensis, Aquaculture Nutrition, 2019, 25(2): 529-539.
（13） Qianqian Wang, Chunfang Cai*, Dianzhang Shui, Shengjie Ren, Wen Chen, Xiamin Cao, Ping Wu, Ting Li, Yuantu Ye. Identification and characterization of two novel peritrophic membrane (PM) genes in the Chinese mitten crab Eriocheir sinensis that exhibit activity against high-pH stress and Aeromonas hydrophilachallenge. Aquaculture research, 2018 (in press).
（14） Daiwu Wu, Luyang Zhou, Minmin Gao, Mengying Wang, Bing Wang, Jie He, Qigang Luo, Yuantu Ye, Chunfang Cai, Ping Wu, Yinzhao Zhang, Qinhua Pu. Effects of stickwater hydrolysates on growth performance for yellow catfish (Pelteobagrus fulvidraco). Aquaculture, 2018, 488:161-173.
（15） Zhi Wang, Chun-fang Cai*, Xia-ming Cao, Jian-ming Zhu, Jie He, Ping Wu, Yuan-tu Ye. Supplementation of dietary astaxanthin alleviated oxidative damage induced by chronic high pH stress, and enhanced carapace astaxanthin concentration of Chinese mitten crab, Eriocheir sinensis. Aquaculture, 2017, 483:230-237.
（16） Chowdhury M.A.K., Zhu J., Cai C., YeY., He J. Dietary protease modulates nutrient retention efficiency and hepatopancreatic protease activity in juvenile Chinese mitten crab Eriocheir sinensis. Aquaculture nutrition, 2017, in press.
（17） Meiling Zhang, Yuhong Sun, Liqiao Chen, Chunfang Cai, Fang Qiao, Zhenyu Du, Erchao Li. Symbiotic Bacteria in Gills and Guts of Chinese Mitten Crab (Eriocheir sinensis) Differ from the Free-Living Bacteria in Water. PLOS ONE | DOI:10.1371/journal.pone.0148135 January 28, 2016.
（18） Chunfang Cai, Ping Wu, Yuantu Ye, Lin Song, Jamie Hooft, Caigeng Yang, Li Kong, Quanwen Chen, Yongling Wang. Assessment of the feasibility of including high levels ofoilseed meals in the diets of juvenile Chinese mitten crabs (Eriocheir sinensis): Effects on growth, non-specific immunity, hepatopancreatic function, and intestinal morphology. Animal Feed Science and Technology, 2014, 196: 117–127.
（19） Fan Xu, Yuan-Tu Ye, Chun-Fang Cai, Ping Wu, Lin Song, Meng Liu, Lin-Jie Yao, Jiao-Jiao Dong, Yu-Wei Huang, Zhi Gong, Jie Qin, Liang Song. Observation of the middle intestinal tight junction structure, cloning and studying tissue distribution of the four Claudin genes of the grass carp (Ctenopharyngodon idellus). Fish Physiol Biochem. 2014, 40:1783–1792.
（20） Chunfang Cai, Lin Song, Yongling Wang, Ping Wu, Yuantu Ye, Zhenlong Zhang, Caigen Yang. Assessment of the feasibility of including high levels of rapeseed meal and peanut meal in diets of juvenile crucian carp (Carassius auratus gibelio♀ × Cyprinus carpio♂): Growth, immunity, intestinal morphology, and microflora. Aquaculture, 2013, 410-411: 203–115.
（21） Chunfang Cai, Xiaohong Gu, Yuantu Ye, Caigeng Yang, Xiuying Dai, Dongxing Chen. Assessment of pollutant loads discharged from aquaculture ponds around Taihu Lake, China. Aquaculture Research, 2013, 44, 795–806.
（22） Li Kong, Chunfang Cai *, Yuantu Ye, Dongxing Chen, Ping Wu, Erchao Li, Liqiao Chen, Lin Song. Comparison of non-volatile compounds and sensory characteristics of Chinese mitten crabs (Eriocheir sinensis) reared in lakes and ponds: potential environmental factors. Aquaculture, 2012, 364-365: 96–102.
（23） Chunfang Cai, Xiaohong Gu, Hezhong Huang, Xiuying Dai, Yuantu Ye, Chenjiang Shi. Water quality, nutrient budget, and pollutant loads in Chinese mitten crab (Eriocheir sinensis) farms around East Taihu Lake. Chinese Journal of Oceanology and Limnology, 2012, 30(1): 29-36.
（24） Chun-Fang Cai, Wen-JuanWang, Yuan-Tu Ye, Ashild Krogdahl, Yong-Ling，Wang, Yan-Mei Xia. Effect of soybean meal, raffinose, and stachyose on the growth, body composition, intestinal morphology, and intestinal microflora of juvenile allogynogenetic silver crucian carp (Carassius auratus gibelio♀ × Cyprinus carpio♂). Aquaculture Research, 2012, 43:128-138.
（25） Yueru Wang, Erchao Li, Na Yu, Xiaodan Wang, Chunfang Cai, Boping Tang, Liqiao Chen1, Alain Van Wormhoudt. Characterization and Expression of Glutamate Dehydrogenase in Response to Acute Salinity Stress in the Chinese Mitten Crab, Eriocheir sinensis. PLOS ONE , 2012, 7(5): e37316.
（26） Chunfang Cai, Erchao Li, Yuantu Ye, A. Krogdahl, Guangmin Jiang, Yonglin Wang, Liqiao Chen. Effect of dietary graded levels of cottonseed meal and gossypol on growth performance, body composition and health aspects of allogynogenetic silver crucian carp, Carassius auratus gibelio♀ × Cyprinus carpio♂. Aquaculture nutrition, 2011, 17(4): 353–360.
（27） Erchao L, Chhorn Lim, Chunfang Cai, Phillip H. Klesiusa. Growth response and resistance to Streptococcus iniae of Nile tilapia, Oreochromis niloticus, fed diets containing different levels of wheat distiller's dried grains with solubles with or without lysine supplementation. Animal Feed Science and Technology, 2011, 170(3): 246-255.
（28） Mette Sørensen, Michael Penn, Adel El-Mowaf, Trond Storebakken, Cai Chunfang, Margareth Øverland, Åshild Krogdahl. Effect of stachyose, raffinose and soya-saponins supplementation on nutrient digestibility, digestive enzymes, gut morphology and growth performance in Atlantic salmon (Salmo salar, L). Aquaculture, 2011，314: 145-152.
（29） Chunfang Cai, Yuantu Ye, Liqiao Chen, Jianguang Qin, Yongling Wang. Oxygen consumption and ammonia excretion of black carp (Mylopharyngdon piceus Richardson) and allogynogenetic crucian carp (Carassius auratus gibelio ♀× Cyprinus carpio♂) fed different carbohydrate diets. Fish Physiol Biochem. 2010, 36:1191–1198.