发表论文
近5年部分期刊论文(共)第一或通讯作者(#共同第一；*共同通讯)
1. Jiang R, Yang M, Zhang S, Huang M* (2023) Advances in sequencing-based studies of microDNA and ecDNA: Databases, identification methods, and integration with single-cell analysis. Computational and Structural Biotechnology Journal. 21:3073-3080. PMID: 37273851
2. Yang M, Zhang S, Jiang R, Chen S*, Huang M* (2023) Circlehunter: a tool to identify extrachromosomal circular DNA from ATAC-Seq data. Oncogenesis. 12(1):28. PMID: 37217468
3. Zhang S, Jiang R, Yang M, Wang T, Chen H, Shi Y, Liu W*, Huang M* (2023) Identification of a novel eighteen‑gene signature of recurrent metastasis neuroblastoma. Journal of Molecular Medicine. 101(4):403-417 PMID: 36856811
4. Liu Z, Meng M, Zhang S, Qiu H, Liu Z, Huang M (2021) Rhythmic Component Analysis Tool (RCAT): A Precise, Efficient and User-Friendly Tool for Circadian Clock Genes Analysis. Interdiscip Sci.14(1):269-278 PMID: 34374039
5. Huang M, Wang Y, Yang M, Yan J, Yang H, Zhuang W, Xu Y, Koeffler HP, Lin DC*, Chen X* (2020) dbInDel: a database of enhancer-associated insertion and deletion variants by analysis of H3K27ac ChIP-Seq. Bioinformatics. 36(5):1649-1651. PMID: 31603498
6. Chen L#, Huang M#,*, Plummer J#, Pan J#, Jiang YY#, Yang Q, Silva TC, Gull N, Chen S, Ding LW, An O, Yang H, Cheng Y, Said JW, Doan N, Dinjens WN, Waters KM, Tuli R, Gayther SA, Klempner SJ, Berman BP, Meltzer SJ, Lin DC*, Koeffler HP (2020) Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma. Gut. 69(4):630-640.PMID: 31409603
7. Chen Y#, Xu L#,*, Mayakonda A#, Huang ML#, Kanojia D#, Tan TZ, Dakle P, Lin RY, Ke XY, Said JW, Chen J, Gery S, Ding LW, Jiang YY, Pang A, Puhaindran ME, Goh BC, Koeffler HP (2019) Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma. Nat Commun. 10(1):1353. PMID: 30903020
8. Lin L#, Huang M#,*, Shi X#, Mayakonda A, Hu K, Jiang YY, Guo X, Chen L, Pang B, Doan N, Said JW, Xie J, Gery S, Cheng X, Lin Z, Li J, Berman BP, Yin D*, Lin DC*, Koeffler HP (2019) Super-enhancer-associated MEIS1 promotes transcriptional dysregulation in Ewing sarcoma in co-operation with EWS-FLI1. Nucleic Acids Res.47(3):1255-1267 PMID: 30496486
9. Huang M*, Chen Y, Yang M, Guo A, Xu Y, Xu L*, Koeffler HP (2018) dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals. Nucleic Acids Res. 46(D1):D71-D77. PMID: 28977473
10. Li B, Xu H, Han H, Song S, Zhang X, Ouyang L, Qian C, Hong Y, Qiu Y, Zhou W, Huang M*, Zhuang W*. Exosome-mediated transfer of lncRUNX2-AS1 from multiple myeloma cells to MSCs contributes to osteogenesis. Oncogene. 2018 Jun 12. PMID: 29895968 (IF: 7.971)
近5年部分期刊论文 参与
1. Liu Z, Huang M, Hong Y, Wang S, Xu Y, Zhong C, Zhang J, Zhuang Z, Shan S, Ren T (2022) Isovalerylspiramycin I suppresses non-small cell lung carcinoma growth through ROS-mediated inhibition of PI3K/AKT signaling pathway. Int J Biol Sci. PMID: 35813464.
2. Li C, Feng Y, Fu Z, Deng J, Gu Y, Wang H, Wu X, Huang Z, Zhu Y, Liu Z, Huang M, Wang T, Hu S, Yao B, Zeng Y, Zhou CJ, Brown SDM, Liu Y, Vidal-Puig A, Dong Y, Xu Y (2022) Human-specific gene CT47 blocks PRMT5 degradation to lead to meiosis arrest. Cell Death Discov. PMID: 35918318
3. Hong Y, Shan S, Gu Y, Huang H, Zhang Q, Han Y, Dong Y, Liu Z, Huang M, Ren T (2022) Malfunction of airway basal stem cells plays a crucial role in pathophysiology of tracheobronchopathia osteoplastica. Nat Commun.13(1):1309 PMID: 35288560.
4. Lu Y, Wu F, Cao Q, Sun Y, Huang M, Xiao J, Zhou B, Zhang L (2021) B7-H4 is increased in lung adenocarcinoma harboring EGFR-activating mutations and contributes to immunosuppression. Oncogene. PMID: 34839353.
5. Xu L, Chen Y, Huang Y, Sandanaraj E, Yu JS, Lin RY, Dakle P, Ke XY, Chong YK, Koh L, Mayakonda A, Nacro K, Hill J, Huang ML, Gery S, Lim SW, Huang Z, Xu Y, Chen J, Bai L, Wang S, Wakimoto H, Yeo TT, Ang BT, Müschen M, Tang C, Tan TZ, Koeffler HP (2021) Topography of transcriptionally active chromatin in glioblastoma. Sci Adv. PMID: 33931443.
6. Shi X, Zheng Y, Jiang L, Zhou B, Yang W, Li L, Ding L, Huang M, Gery S, Lin DC, Koeffler HP (2020) EWS-FLI1 regulates and cooperates with core regulatory circuitry in Ewing sarcoma. Nucleic Acids Res. 48(20):11434-11451.PMID: 33080033.
7. Zhao Z, Zhang N, Li A, Zhou B, Chen Y, Chen S, Huang M, Wu F, Zhang L (2020) Insulin-like growth factor-1 receptor induces immunosuppression in lung cancer by upregulating B7-H4 expression through the MEK/ERK signaling pathway. Cancer Lett. 485:14-26. (IF:7.36)
8. Jiang Y, Jiang YY, Xie JJ, Mayakonda A, Hazawa M, Chen L, Xiao JF, Li CQ, Huang ML, Ding LW, Sun QY, Xu L, Kanojia D, Jeitany M, Deng JW, Liao LD, Soukiasian HJ, Berman BP, Hao JJ, Xu LY, Li EM, Wang MR, Bi XG, Lin DC, Koeffler HP (2018) Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression. Nat Commun. 9(1):3619. PMID: 30190462.
9. Shi J, Song S, Han H, Xu H, Huang M, Qian C, Zhang X, Ouyang L, Hong Y, Zhuang W, Li B (2018) Potent Activity of the Bromodomain Inhibitor OTX015 in Multiple Myeloma. Mol Pharm. 15(9):4139-4147. PMID: 30048594
10. Ding LW, Tan KT, Sun QY, Lao ZT, Yang H, Jiang N, Chien W, Xiao JF, Loh XY, Huang ML, Lill M, Lin DC, Yeoh AEJ, Koeffler HP (2018) Clonality and clonal evolution analysis of paediatric ALL based on B-cell receptor/T-cell receptor rearrangement. Br J Haematol. PMID: 29532914.
11. Xu L, Chen Y, Mayakonda A, Koh L, Chong YK, Buckley DL, Sandanaraj E, Lim SW, Lin RY, Ke XY, Huang ML, Chen J, Sun W, Wang LZ, Goh BC, Dinh HQ, Kappei D, Winter GE, Ding LW, Ang BT, Berman BP, Bradner JE, Tang C, Koeffler HP. (2018) Targetable BET proteins- and E2F1-dependent transcriptional program maintains the malignancy of glioblastoma. Proc Natl Acad Sci U S A. 115(22):E5086-E5095. PMID: 29764999.
近5年部分书籍
1.Trends in Insect Molecular Biology and Biotechnology. Chapter 15, Correlation of Insects with Forensic Sciences. Mian Sahib Zarand Moli Huang. DOI: 10.1007/978-3-319-61343-7. Springer International Publishing. 2018. ISBN: 978-3-319-61342-0. I